MARA results: cerebellum, embryo E17, biol

Sample name: cerebellum, embryo E17, biol_rep2 (E17R2)

Sorted Z-values histogram for the sample cerebellum, embryo E17, biol_rep2 (E17R2)

Sorted z-values for every WM.

WM name	Z-value	Associated genes	Logo
REST.p3	5.401	Rest
UGUGCUU	4.788
RFX1..5_RFXANK_RFXAP.p2	4.246	Rfx1 Rfxap Rfx5 Rfxank Rfx4 Rfx3 Rfx2
ESRRA.p2	3.778	Esrra
ZNF143.p2	3.700	Zfp143
MZF1.p2	2.836	Mzf1
EVI1.p2	2.690	Mecom
AHR_ARNT_ARNT2.p2	2.551	Arnt Ahr Arnt2
PRRX1,2.p2	2.497	Prrx2 Prrx1
ZBTB6.p2	2.295	Zbtb6
UAUUGCU	2.269
DBP.p2	2.247	Dbp
EGR1..3.p2	2.209	Egr3 Egr1 Egr2
EWSR1-FLI1.p2	2.125	Fli1 Ewsr1
HOX{A6,A7,B6,B7}.p2	2.029	Hoxb6 Hoxa7 Hoxb7 Hoxa6
KLF12.p2	1.994	Klf12
ZEB1.p2	1.946	Zeb1
SP1.p2	1.860	Sp1
MTF1.p2	1.753	Mtf1
CAGCAGG	1.743
AUUGCAC	1.734
ZNF423.p2	1.694	Zfp423
AAAGUGC	1.638
PAX2.p2	1.624	Pax2
NRF1.p2	1.516	Nrf1
GAUUGUC	1.461
ZFP161.p2	1.440	Zfp161
SNAI1..3.p2	1.440	Snai2 Snai1 Snai3
ACAUUCA	1.421
ETS1,2.p2	1.416	Ets2 Ets1
NFE2L2.p2	1.384	Nfe2l2
SPZ1.p2	1.355	Spz1
NFIX.p2	1.252	Nfix
ATF2.p2	1.126	Atf2
ZNF148.p2	1.095	Zfp148
GUGCAAA	1.081
FOX{F1,F2,J1}.p2	1.069	Foxf2 Foxj1 Foxf1a
IKZF1.p2	1.056	Ikzf1
NKX2-1,4.p2	1.054	Nkx2-1 Nkx2-4
UGCAUUG	0.983
TFCP2.p2	0.978	Tcfcp2
POU6F1.p2	0.947	Pou6f1
ACCCUGU	0.923
GGAAGAC	0.912
T.p2	0.902	T
EOMES.p2	0.898	Eomes
LMO2.p2	0.892	Lmo2
ZIC1..3.p2	0.888	Zic1 Zic2 Zic3
UUGGCAC	0.874
MYOD1.p2	0.869	Myod1
AAUACUG	0.853
HOX{A4,D4}.p2	0.846	Hoxa4 Hoxd4
NKX3-2.p2	0.828	Nkx3-2
GTF2I.p2	0.827	Gtf2i
POU5F1.p2	0.820	Pou5f1
FOX{I1,J2}.p2	0.790	Foxi1 Foxj2
TP53.p2	0.786	Trp53
GFI1B.p2	0.777	Gfi1b
ZBTB16.p2	0.758	Zbtb16
ZNF384.p2	0.754	Zfp384
ATF6.p2	0.750	Atf6
GGCUCAG	0.705
UGAAAUG	0.698
NHLH1,2.p2	0.695	Nhlh1 Nhlh2
UAAGACG	0.684
GATA1..3.p2	0.679	Gata1 Gata2 Gata3
AACAGUC	0.678
PBX1.p2	0.645	Pbx1
FEV.p2	0.634	Fev
ARNT_ARNT2_BHLHB2_MAX_MYC_USF1.p2	0.618	Arnt Max Myc Usf1 Bhlhe40 Arnt2
HMX1.p2	0.611	Hmx1
GCUACAU	0.582
AACACUG	0.567
EBF1.p2	0.550	Ebf1
NR5A1,2.p2	0.543	Nr5a1 Nr5a2
GGCAGUG	0.534
GCUGGUG	0.525
BACH2.p2	0.509	Bach2
FOXQ1.p2	0.501	Foxq1
UAAGACU	0.501
CTCF.p2	0.500	Ctcf
MAFB.p2	0.489	Mafb
MYFfamily.p2	0.484	Myod1 Myf6 Myf5 Myog
CUACAGU	0.468
CUX2.p2	0.466	Cux2
STAT5{A,B}.p2	0.460	Stat5b Stat5a
HLF.p2	0.451	Hlf
GLI1..3.p2	0.431	Gli1 Gli2 Gli3
GUAAACA	0.424
UUGUUCG	0.421
GGAGUGU	0.407
FOXL1.p2	0.402	Foxl1
HIC1.p2	0.393	Hic1
AUGACAC	0.385
POU1F1.p2	0.358	Pou1f1
NKX3-1.p2	0.353	Nkx3-1
SRY.p2	0.345	Sry
AGCAGCA	0.339
GAGAACU	0.338
ARID5B.p2	0.335	Arid5b
CUCCCAA	0.301
CACAGUG	0.299
CGUGUCU	0.297
RORA.p2	0.296	Rora
EN1,2.p2	0.295	En1 En2
GAUAUGU	0.245
UUGGUCC	0.244
SOX5.p2	0.244	Sox5
DMAP1_NCOR{1,2}_SMARC.p2	0.234	Smarca1 Smarcc2 Smarca5 Ncor1 Ncor2 Dmap1	$logo of DMAP1_NCOR{1,2}_SMARC.p2$
GAUCAGA	0.230
MSX1,2.p2	0.226	Msx1 Msx2
GZF1.p2	0.226	Gzf1
AGGUAGU	0.223
AACCUGG	0.217
AUGGCAC	0.216
UGACCUA	0.213
ONECUT1,2.p2	0.208	Onecut2 Onecut1
GCAGCAU	0.200
bHLH_family.p2	0.178	Arntl Mitf Mxi1 Tcfe3 Clock Olig2 Mxd4 Hey2 Hey1 Heyl Mlxipl Hes6 Mxd3 Arntl2 Id1 Mnt Olig1 Npas2
PDX1.p2	0.175	Pdx1
RXRA_VDR{dimer}.p2	0.171	Vdr	$logo of RXRA_VDR{dimer}.p2$
AAUCUCU	0.167
AAUGCCC	0.166
TFAP4.p2	0.124	Tcfap4
ACUGCAU	0.119
STAT1,3.p3	0.111	Stat1 Stat3
JUN.p2	0.108	Jun Jund Junb
TBX4,5.p2	0.073	Tbx5 Tbx4
AACGGAA	0.063
AGUGGUU	0.056
PAX8.p2	0.051	Pax8
VSX1,2.p2	0.042	Vsx2 Vsx1
UCCAGUU	0.037
UUUUUGC	0.032
TFAP2B.p2	0.032	Tcfap2b
HOXA9_MEIS1.p2	0.029	Meis1 Hoxa9
AR.p2	0.022	Ar
UUGGCAA	0.019
ACUGGCC	0.007
ACCCGUA	-0.003
HES1.p2	-0.030	Hes1
NR6A1.p2	-0.031	Nr6a1
RXRG_dimer.p3	-0.034	Nr1h2 Rxra Pparg Ppara Rxrb Rxrg
PATZ1.p2	-0.037	Patz1
AACCGUU	-0.042
GAGAUGA	-0.048
CCAGCAU	-0.052
CAGUGCA	-0.067
AAGGUGC	-0.079
CGUACCG	-0.094
PAX6.p2	-0.094	Pax6
PAX3,7.p2	-0.096	Pax7 Pax3
TCF4_dimer.p2	-0.101	Tcf4
UGUGCGU	-0.109
LHX3,4.p2	-0.124	Lhx3 Lhx4
AAUCUCA	-0.126
ALX1.p2	-0.129	Alx1
AGCAGCG	-0.134
TAL1_TCF{3,4,12}.p2	-0.139	Tcf3 Tcf4 Tal1 Tcf12	$logo of TAL1_TCF{3,4,12}.p2$
SREBF1,2.p2	-0.142	Srebf1 Srebf2
ACAGUAC	-0.144
UCAAGUA	-0.149
ATF5_CREB3.p2	-0.155	Atf5 Creb3
FOXD3.p2	-0.162	Foxd3
BPTF.p2	-0.181	Bptf
GUAGUGU	-0.200
MYBL2.p2	-0.203	Mybl2
NKX6-1,2.p2	-0.206	Nkx6-1 Nkx6-2
NFE2L1.p2	-0.229	Nfe2l1
AGUGCAA	-0.236
GGACGGA	-0.249
ACAGUAU	-0.251
CEBPA,B_DDIT3.p2	-0.264	Ddit3 Cebpa Cebpb
HOX{A5,B5}.p2	-0.266	Hoxb5 Hoxa5
IKZF2.p2	-0.275	Ikzf2
NANOG{mouse}.p2	-0.277	Nanog
KLF4.p3	-0.281	Klf4
RBPJ.p2	-0.287	Rbpj
TGIF1.p2	-0.294	Tgif1
UGCAUAG	-0.300
UAAUGCU	-0.310
MYB.p2	-0.310	Myb
CREB1.p2	-0.317	Creb1
GTF2A1,2.p2	-0.339	Gtf2a1 Gtf2a2
CCUUCAU	-0.345
NKX2-2,8.p2	-0.346	Nkx2-2 Nkx2-9
HMGA1,2.p2	-0.358	Hmga1 Hmga2
HAND1,2.p2	-0.369	Hand1 Hand2
AGCUGCC	-0.373
GGCAAGA	-0.376
AAGUGCU	-0.386
NANOG.p2	-0.408	Nanog
AUGGCUU	-0.412
POU3F1..4.p2	-0.421	Pou3f1 Pou3f3 Pou3f2 Pou3f4
HIF1A.p2	-0.426	Hif1a
UCACAGU	-0.436
FOSL2.p2	-0.437	Fosl2
ATF4.p2	-0.457	Atf4
GUCAGUU	-0.461
FOXO1,3,4.p2	-0.462	Foxo1 Foxo4 Foxo3
FOX{C1,C2}.p2	-0.486	Foxc1 Foxc2
FOXP3.p2	-0.513	Foxp3
FOX{D1,D2}.p2	-0.516	Foxd2 Foxd1
AGCUUAU	-0.537
PPARG.p2	-0.538	Pparg
UCACAUU	-0.543
RXR{A,B,G}.p2	-0.547	Rxra Rxrb Rxrg
POU2F1..3.p2	-0.559	Pou2f2 Pou2f1 Pou2f3
TLX2.p2	-0.560	Tlx2
NFE2.p2	-0.565	Nfe2
CRX.p2	-0.575	Crx
UCCCUUU	-0.593
ZNF238.p2	-0.603	Zfp238
RREB1.p2	-0.604	Rreb1
LEF1_TCF7_TCF7L1,2.p2	-0.623	Tcf7 Tcf7l2 Lef1 Tcf7l1
SMAD1..7,9.p2	-0.652	Smad5 Smad1 Smad3 Smad4 Smad2 Smad6 Smad7 Smad9
SPI1.p2	-0.669	Sfpi1
FOXN1.p2	-0.675	Foxn1
AIRE.p2	-0.677	Aire
CCAGUGU	-0.705
CDC5L.p2	-0.722	Cdc5l
AGCACCA	-0.726
ESR1.p2	-0.727	Esr1
NKX2-3_NKX2-5.p2	-0.764	Nkx2-5 Nkx2-3
GUAACAG	-0.779
POU5F1_SOX2{dimer}.p2	-0.802	Pou5f1 Sox2	$logo of POU5F1_SOX2{dimer}.p2$
TFEB.p2	-0.821	Tcfeb
SOX17.p2	-0.829	Sox17
NR3C1.p2	-0.865	Nr3c1
CDX1,2,4.p2	-0.880	Cdx1 Cdx2 Cdx4
EP300.p2	-0.891	Ep300
GGAAUGU	-0.895
SOX{8,9,10}.p2	-0.924	Sox9 Sox8 Sox10
PRDM1.p3	-0.949	Prdm1
MAZ.p2	-0.973	Maz
PITX1..3.p2	-0.986	Pitx2 Pitx3 Pitx1
SOX2.p2	-1.025	Sox2
HNF1A.p2	-1.053	Hnf1a
HBP1_HMGB_SSRP1_UBTF.p2	-1.072	Hmgb2 Hmgb3 Ssrp1 Ubtf Hbp1
FOS_FOS{B,L1}_JUN{B,D}.p2	-1.091	Fos Junb Fosl1 Jund Fosb	$logo of FOS_FOS{B,L1}_JUN{B,D}.p2$
HSF1,2.p2	-1.128	Hsf1 Hsf2
ADNP_IRX_SIX_ZHX.p2	-1.156	Six5 Zhx1 Irx4 Adnp Zhx3 Zhx2 Irx5 Six2
SPIB.p2	-1.215	Spib
TLX1..3_NFIC{dimer}.p2	-1.290	Tlx1 Tlx3	$logo of TLX1..3_NFIC{dimer}.p2$
NFKB1_REL_RELA.p2	-1.397	Rela Rel Nfkb1
NFATC1..3.p2	-1.407	Nfatc3 Nfatc2 Nfatc1
PAX4.p2	-1.495	Pax4
PAX5.p2	-1.504	Pax5
SRF.p3	-1.521	Srf
RUNX1..3.p2	-1.583	Runx1 Runx3 Runx2
CUUUGGU	-1.622
E2F1..5.p2	-1.654	E2f4 E2f5 E2f2 E2f1 E2f3
MEF2{A,B,C,D}.p2	-1.690	Mef2a Mef2c Mef2d Mef2b
EHF.p2	-1.702	Ehf
XBP1.p3	-1.829	Xbp1
TBP.p2	-1.830	Tbp
NR1H4.p2	-1.902	Nr1h4
TFDP1.p2	-1.909	Tfdp1
NFIL3.p2	-1.956	Nfil3
IRF1,2,7.p3	-2.083	Irf1 Irf2 Irf7
GAGGUAG	-2.217
ELK1,4_GABP{A,B1}.p3	-2.309	Gabpa Gabpb1 Elk4 Elk1	$logo of ELK1,4_GABP{A,B1}.p3$
STAT2,4,6.p2	-2.351	Stat2 Stat4 Stat6
ELF1,2,4.p2	-2.355	Elf2 Elf1 Elf4
YY1.p2	-2.398	Yy1
GATA6.p2	-2.427	Gata6
FOXA2.p3	-2.524	Foxa2
GFI1.p2	-2.606	Gfi1
TFAP2{A,C}.p2	-3.122	Tcfap2c Tcfap2a
CCCUGAG	-3.586
HNF4A_NR2F1,2.p2	-3.681	Nr2f1 Nr2f2 Hnf4a
NFY{A,B,C}.p2	-4.044	Nfyc Nfyb Nfya
TEAD1.p2	-4.103	Tead1 Tead2 Tead3 Tead4
AAGGCAC	-4.383

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Sample name: cerebellum, embryo E17, biol_rep2 (E17R2)

Sorted z-values for every WM.